Automated Chip-Based Medical Biosensors for Clinical Diagnostics

A multidisciplinary collaboration merging engineering with biochemistry.

September 2012 – March 2013
University of Toronto, Canada
Position: Research Assistant

Automated Chip-Based Medical Biosensors for Clinical Diagnostics

A multidisciplinary collaboration merging engineering with biochemistry.

September 2012 – March 2013
University of Toronto, Canada
Position: Research Assistant

Ever had an urgent medical test done at a clinic or doctor’s office, only to wait days or weeks for the results to come back from the lab? Imagine instead if there was a handheld device that could test you for a host of viruses and diseases and provide a diagnosis in under 20 minutes. Such a technology would revolutionize the speed, cost-effectiveness, and clinical delivery of providing medical care.

For roughly six months beginning in September 2012, I was part of a research team that was turning this concept into a reality. Working with the group of Professor Shana Kelley at the University of Toronto, our focus was on a powerful “lab-on-a-chip” diagnostic system that used nanostructured micro-electrodes to search fluid samples for tiny chemical fingerprints of viruses, bacteria, antibodies, or proteins.

NME Schematic

Tiny micro-electrodes change their electrochemical properties after bonding with biomarkers such as viral RNA.

Ever had an urgent medical test done at a clinic or doctor’s office, only to wait days or weeks for the results to come back from the lab? Imagine instead if there was a handheld device that could test you for a host of viruses and diseases and provide a diagnosis in under 20 minutes. Such a technology would revolutionize the speed, cost-effectiveness, and clinical delivery of providing medical care.

For roughly six months beginning in September 2012, I was part of a research team that was turning this concept into a reality. Working with the group of Professor Shana Kelley at the University of Toronto, our focus was on a powerful “lab-on-a-chip” diagnostic system that used nanostructured micro-electrodes to search fluid samples for tiny chemical fingerprints of viruses, bacteria, antibodies, or proteins.

NME Schematic

Tiny micro-electrodes change their electrochemical properties after bonding with biomarkers such as viral RNA.

One of the digital microfluidic chips I designed and fabricated for automated diagnostic tests.
One of the digital microfluidic chips I designed and fabricated for automated diagnostic tests.

Automated Fluid-Handling

Such diagnostic tests are a multi-step process, requiring several different chemical solutions to be added and removed from the test site. My work spearheaded efforts to make this technology fully-automated by interfacing it with digital microfluidics (DMF), a novel fluid-handling technique in which microliter-sized droplets are manipulated by applying voltage signals to an addressable array of electrodes.

Click on the image to see a brief video clip of this DMF chip in action!

Automated Fluid-Handling

Such diagnostic tests are a multi-step process, requiring several different chemical solutions to be added and removed from the test site. My work spearheaded efforts to make this technology fully-automated by interfacing it with digital microfluidics (DMF), a novel fluid-handling technique in which microliter-sized droplets are manipulated by applying voltage signals to an addressable array of electrodes.

Click on the image to see a brief video clip of this DMF chip in action!

One of the digital microfluidic chips I designed and fabricated for automated diagnostic tests.
One of the digital microfluidic chips I designed and fabricated for automated diagnostic tests.

Creating Prototype Chips

My contributions to the project included:

  • carrying out cleanroom microfabrication of prototype chips (at TNFC, Toronto)
  • improving the chip fabrication recipes for better device yield
  • the design of a new chip layout (including fabrication micro-lithography masks) to improve fluid handling
  • building the first electrical interface to connect our chips to a DMF voltage controller
  • experimentally testing the prototype chips (including pathogen and solution preparation)
Holding a fresh batch of prototype chips in the TNFC cleanroom.
Holding a fresh batch of prototype chips in the TNFC cleanroom.

Creating Prototype Chips

My contributions to the project included:

  • carrying out cleanroom microfabrication of prototype chips (at TNFC, Toronto)
  • improving the chip fabrication recipes for better device yield
  • the design of a new chip layout (including fabrication micro-lithography masks) to improve fluid handling
  • building the first electrical interface to connect our chips to a DMF voltage controller
  • experimentally testing the prototype chips (including pathogen and solution preparation)
Holding a fresh batch of prototype chips in the TNFC cleanroom.
Holding a fresh batch of prototype chips in the TNFC cleanroom.

Some of the chip designs are shown below:

DMF Chip Gen2 Schematic

My 2nd-gen chip design and test workflow.

Layout for 3rd-gen chip design.
Layout for 3rd-gen chip design.
Details of the 3rd-gen chip fabrication masks.
Details of the 3rd-gen chip fabrication masks.

Outcomes

These efforts helped lay the foundations for DMF-automated, ultra-sensitive clinical biosensing on a chip with nanostructured micro-electrodes. Several of the improvements I developed, such as separating the DMF and biosensing electrodes onto two different plates, were employed by the final device architecture published here.

Our early results were presented at the International Conference on Analytical Sciences and Spectroscopy 2013. [Darius G. Rackus, Alexandre Zaragoza, Alya Bhimji, Ryan Marchildon, Michael D. M. Dryden, Mahla Poudineh, Mohtashim Shamsi, Shana O. Kelley, and Aaron Wheeler, “Towards Automated Electrochemical ELISA on a Chip”, 59th International Conference on Analytical Sciences and Spectroscopy, (June 28, 2013).]

Check out some of my other past projects!

I’ve worked on technical projects in a variety of fields. Here are some highlights:

Integrated Photonics

Empowering next-generation optical technologies.

Quantum Computing

My time as a "quantum coder".

Medical Radiation Dose Mapping

Pioneering a new technique for radiation treatment calibration.